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[ ] Udemy - Learn Docking & Molecular Dynamics Simulation From Scratch

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文件列表

  1. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Practical-4_ How to Predict 3D Structure Using Modeller (Homology).mp4 268MB
  2. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 Practical-3_ Fixing Missing Residues Issue With Modeller.mp4 149MB
  3. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/009 Practical-5_ How to Use I-TASSER for Prediction of 3D Structure_.mp4 148MB
  4. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/003 Practical-1_ How To Download Protein Structure From Protein Databank.mp4 135MB
  5. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking.mp4 103MB
  6. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/024 Practical-35 (Part-A) Performing Docking Using AutoDock4.mp4 98MB
  7. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/004 Practical-2_ Visualization of 3D Structure of Protein Using Pymol.mp4 91MB
  8. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/017 Practical-30 Drawing of Ligand Structure in ChemSketch.mp4 86MB
  9. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/027 Practical-34 Analyzing the Docking Data.mp4 83MB
  10. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/028 Practical-35_ PatchDock; Shape Complementary Docking Program.mp4 80MB
  11. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/020 Practical-33 Setting Grid.mp4 76MB
  12. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database.mp4 73MB
  13. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/018 Practical-31 Preparation of Ligand Molecule for Docking.mp4 65MB
  14. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/009 Practical-40_ Making Complex.mp4 63MB
  15. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/001 Practical-7 Installation of Linux in Windows Environment.mp4 61MB
  16. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Practical-44_ Analysis.mp4 60MB
  17. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/002 Practical-8 Installation of GROMACS.mp4 60MB
  18. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/022 Practical-34 (Part-A) Performing Docking with Vina.mp4 58MB
  19. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/026 Practical-33 Preforming Docking with CB Dock.mp4 57MB
  20. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/008 Practical-39_ Preparation of Ligand Topology File.mp4 52MB
  21. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/008 Practical-49_ Preparation of Ligands for Docking.mp4 51MB
  22. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/001 What is Protein_.mp4 51MB
  23. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/012 Practical-15 Equilibration Phase-I (Part-A).mp4 50MB
  24. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/010 Practical-13 Ionization Step in Molecular Dynamics Simulation.mp4 50MB
  25. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/008 Practical-11 Creation of Topology File In GROMACS.mp4 49MB
  26. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/011 Practical-14 Energy Minimization (EM) in GROMACS.mp4 49MB
  27. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/009 Practical-12 Solvation of Step in Molecular Dynamics Simulation.mp4 48MB
  28. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results.mp4 47MB
  29. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/026 Practical-25 Opening of XVG Files in Excel.mp4 46MB
  30. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/011 Practical-42_ Ligand Restrain.mp4 46MB
  31. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/007 Practical-48_ Downloading of Thousands of Ligands in One Click.mp4 43MB
  32. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/010 Practical-41_ Solvation, Ionization & Energy Minimization of Complex.mp4 40MB
  33. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/010 Practical-6_ Introduction of Alpha-Fold Database and Alpha-Fold Colab.mp4 40MB
  34. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/017 Practical-19 Running Molecular Dynamics Simulation Final Phase.mp4 39MB
  35. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/008 Protein Structure Preparation for Molecular Dynamics Simulations.mp4 39MB
  36. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/010 Practical-51_ Docking of Ligands with Receptors in Vina.mp4 39MB
  37. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/019 Practical-32 Prediction of Active Site of Protein.mp4 39MB
  38. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/007 Practical-38_ Preparation of Protein Topology File.mp4 38MB
  39. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/005 Practical-46_ Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu).mp4 38MB
  40. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/027 Practical-25.1_ Visualization of MD Trajectory in Pymol.mp4 37MB
  41. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/015 Practical-18 Equilibration Phase-II (Part-B).mp4 35MB
  42. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/010 Theory of Docking Steps-Part-1.mp4 33MB
  43. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/013 Practical-27_ Installation of Ligand Drawing Tools.mp4 32MB
  44. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/013 Practical-44_ Equilibration.mp4 31MB
  45. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/021 Practical-20 Calculation of RMSD.mp4 31MB
  46. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid.mp4 30MB
  47. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/004 Practical-36_ Very First Step; Preparation of Protein and Ligand.mp4 30MB
  48. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/018 Basic Theory of Molecular Dynamics Simulation Data Analysis.mp4 29MB
  49. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/006 Practical-47_ Preparation of Protein Receptor for Virtual Screening.mp4 29MB
  50. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/023 Practical-34 (Part-B) Visualization of Vina Docking Data.mp4 28MB
  51. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations.mp4 28MB
  52. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/004 Some Basic Commands for Linux Operating System.mp4 27MB
  53. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/005 Basic Theory of Molecular Dynamics Simulation (Part-4).mp4 26MB
  54. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb).mp4 26MB
  55. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/022 Practical-21 Calculation of RMSF.mp4 26MB
  56. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/014 Practical-17 Equilibration Phase-II (Part-A).mp4 25MB
  57. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/013 Practical-16 Equilibration Phase-I (Part-B).mp4 24MB
  58. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/011 Theory of Docking Steps-Part-2.mp4 24MB
  59. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/006 Sampling Algorithms-Part-4.mp4 23MB
  60. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/023 Practical-22 Calculation of Radius of Gyration (Rg).mp4 23MB
  61. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/001 Importance of Virtual Screening.mp4 23MB
  62. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA).mp4 23MB
  63. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/014 Practical-44_ Production Phase.mp4 22MB
  64. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/002 Basic Theory of Molecular Dynamics Simulation (Part-1).mp4 22MB
  65. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/003 Basic Theory of Molecular Dynamics Simulation (Part-2).mp4 21MB
  66. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/016 Understanding md.mdp File Before Final Phase.mp4 20MB
  67. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/001 Biggest Drawback of Conventional Docking Protocol.mp4 20MB
  68. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/020 Bringing the Protein in Center Before Data Analysis.mp4 20MB
  69. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/010 Solvation and Ionization of System.mp4 20MB
  70. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/012 Practical-43_ Thermostats.mp4 20MB
  71. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/011 Practical-52_ Analysis.mp4 19MB
  72. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations.mp4 18MB
  73. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/009 Preparation of Topology File for Molecular Dynamics Simulations.mp4 18MB
  74. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/002 Experimental Techniques to Determine 3D Structure of Protein.mp4 18MB
  75. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/009 Practical-50_ Setting Grid and Writing of Configuration File.mp4 18MB
  76. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/002 Introduction to Virtual Screening.mp4 17MB
  77. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/012 Equilibration and Production Phase of Molecular Dynamics Simulation.mp4 17MB
  78. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/015 Issue With Protein Structure Preparation in MGL Tools.mp4 17MB
  79. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/005 Sampling Algorithms-Part-3.mp4 16MB
  80. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/005 Fixing the Missing Residues in Protein 3D Structure Downloaded.mp4 16MB
  81. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/003 Fundamental Steps of Virtual Screening.mp4 16MB
  82. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/004 Basic Theory of Molecular Dynamics Simulation (Part-3).mp4 16MB
  83. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/021 Very Important Step; Be Careful Here.mp4 16MB
  84. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/004 Work Flow of Molecular Dynamics in GROMACS.mp4 15MB
  85. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/001 Basic Introduction of Molecular Dynamic Simulations and its Steps.mp4 15MB
  86. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/007 Scoring Algorithms.mp4 15MB
  87. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/002 Features of Linux Operating System.mp4 14MB
  88. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/001 Basic Type of Operating System Available in Market.mp4 14MB
  89. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 Practical-37_ Necessary Files Needed For Molecular Dynamics Simulations.mp4 13MB
  90. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/005 What's Next_.mp4 12MB
  91. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/001 Introduction of Docking-Part-1.mp4 11MB
  92. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/002 Introduction of Docking-Part-2.mp4 10MB
  93. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/003 Modules of GROMACS Used in Molecular Dynamics Tutorial.mp4 10MB
  94. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/006 Commands to Run Molecular Dynamics Simulations (For You).mp4 9MB
  95. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/006 Commands to Run Ligand-Protein Molecular Dynamics Simulations.mp4 8MB
  96. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/003 Basic Steps of Protein-Ligand MD Simulations.mp4 8MB
  97. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/009 Basic Steps in Docking Protocol.mp4 8MB
  98. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/006 MD (Molecular Dynamics Simulation) Cycle.mp4 8MB
  99. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/011 Energy Minimization (EM) of System.mp4 8MB
  100. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/019 Commands for Analysis of Molecular Dynamics Simulation Data.mp4 8MB
  101. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/008 Types of Docking.mp4 7MB
  102. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/003 Sampling Algorithms-Part-1.mp4 6MB
  103. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/007 Intro to Protein 3D Structure Prediction.mp4 5MB
  104. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/003 Terminal of Linux Operating System.mp4 5MB
  105. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727938-pdb-95.pir 5MB
  106. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/004 Sampling Algorithms-Part-2.mp4 5MB
  107. ~Get Your Files Here !/01 - Important Massage Before Start of The Course/001 Important Massage from Instructors.mp4 4MB
  108. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/004 Commands Needed to Run Virtual Screening.mp4 4MB
  109. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/007 Basic Steps of Molecular Dynamics Simulations.mp4 4MB
  110. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations.mp4 3MB
  111. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706258-Commands-to-Install-GROMACS-Using-Linux-Terminal.pdf 92KB
  112. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706644-Commands-to-run-MD-simulation-of-Protein-in-Water.pdf 88KB
  113. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37708482-Commands-for-MD-Ligand-Protein-Complex.pdf 82KB
  114. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/37713454-Commands-to-Run-Vina-for-Virtual-Screening-in-Linux-Environment.pdf 70KB
  115. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37707724-Commands-to-Analyze-the-MD-Data.pdf 67KB
  116. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37708606-Commands-to-Analyze-the-Molecular-Dynamics-Simulation-Data-of-Ligand-Protein-Complex.pdf 64KB
  117. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390682-cgenff-charmm2gmx.py 37KB
  118. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Practical-4_ How to Predict 3D Structure Using Modeller (Homology)_en.vtt 31KB
  119. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 Practical-3_ Fixing Missing Residues Issue With Modeller_en.vtt 19KB
  120. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/003 Practical-1_ How To Download Protein Structure From Protein Databank_en.vtt 15KB
  121. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/009 Practical-5_ How to Use I-TASSER for Prediction of 3D Structure__en.vtt 13KB
  122. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/017 Practical-30 Drawing of Ligand Structure in ChemSketch_en.vtt 13KB
  123. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking_en.vtt 13KB
  124. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/027 Practical-34 Analyzing the Docking Data_en.vtt 11KB
  125. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/024 Practical-35 (Part-A) Performing Docking Using AutoDock4_en.vtt 11KB
  126. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/008 Practical-49_ Preparation of Ligands for Docking_en.vtt 10KB
  127. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/022 Practical-34 (Part-A) Performing Docking with Vina_en.vtt 9KB
  128. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/028 Practical-35_ PatchDock; Shape Complementary Docking Program_en.vtt 9KB
  129. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/018 Practical-31 Preparation of Ligand Molecule for Docking_en.vtt 9KB
  130. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database_en.vtt 8KB
  131. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/026 Practical-33 Preforming Docking with CB Dock_en.vtt 8KB
  132. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Practical-44_ Analysis_en.vtt 8KB
  133. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/004 Practical-2_ Visualization of 3D Structure of Protein Using Pymol_en.vtt 8KB
  134. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/020 Practical-33 Setting Grid_en.vtt 8KB
  135. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/009 Practical-40_ Making Complex_en.vtt 7KB
  136. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/010 Practical-13 Ionization Step in Molecular Dynamics Simulation_en.vtt 7KB
  137. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/018 Basic Theory of Molecular Dynamics Simulation Data Analysis_en.vtt 7KB
  138. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/008 Practical-39_ Preparation of Ligand Topology File_en.vtt 7KB
  139. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/001 What is Protein__en.vtt 7KB
  140. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/012 Practical-15 Equilibration Phase-I (Part-A)_en.vtt 7KB
  141. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/011 Practical-42_ Ligand Restrain_en.vtt 7KB
  142. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/010 Practical-6_ Introduction of Alpha-Fold Database and Alpha-Fold Colab_en.vtt 7KB
  143. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/007 Practical-48_ Downloading of Thousands of Ligands in One Click_en.vtt 6KB
  144. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/026 Practical-25 Opening of XVG Files in Excel_en.vtt 6KB
  145. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/008 Practical-11 Creation of Topology File In GROMACS_en.vtt 6KB
  146. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results_en.vtt 6KB
  147. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/011 Practical-14 Energy Minimization (EM) in GROMACS_en.vtt 6KB
  148. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/002 Practical-8 Installation of GROMACS_en.vtt 6KB
  149. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/009 Practical-12 Solvation of Step in Molecular Dynamics Simulation_en.vtt 6KB
  150. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid_en.vtt 6KB
  151. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/010 Practical-51_ Docking of Ligands with Receptors in Vina_en.vtt 6KB
  152. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/010 Practical-41_ Solvation, Ionization & Energy Minimization of Complex_en.vtt 5KB
  153. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/023 Practical-34 (Part-B) Visualization of Vina Docking Data_en.vtt 5KB
  154. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations_en.vtt 5KB
  155. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/001 Practical-7 Installation of Linux in Windows Environment_en.vtt 5KB
  156. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/007 Practical-38_ Preparation of Protein Topology File_en.vtt 5KB
  157. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/004 Work Flow of Molecular Dynamics in GROMACS_en.vtt 5KB
  158. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/005 Practical-46_ Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu)_en.vtt 5KB
  159. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/013 Practical-44_ Equilibration_en.vtt 5KB
  160. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/019 Practical-32 Prediction of Active Site of Protein_en.vtt 5KB
  161. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/017 Practical-19 Running Molecular Dynamics Simulation Final Phase_en.vtt 5KB
  162. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/013 Practical-27_ Installation of Ligand Drawing Tools_en.vtt 5KB
  163. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/027 Practical-25.1_ Visualization of MD Trajectory in Pymol_en.vtt 4KB
  164. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations_en.vtt 4KB
  165. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/020 Bringing the Protein in Center Before Data Analysis_en.vtt 4KB
  166. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/003 Fundamental Steps of Virtual Screening_en.vtt 4KB
  167. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/004 Some Basic Commands for Linux Operating System_en.vtt 4KB
  168. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/003 Basic Theory of Molecular Dynamics Simulation (Part-2)_en.vtt 4KB
  169. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/015 Practical-18 Equilibration Phase-II (Part-B)_en.vtt 4KB
  170. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/010 Theory of Docking Steps-Part-1_en.vtt 4KB
  171. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/021 Practical-20 Calculation of RMSD_en.vtt 4KB
  172. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/006 Sampling Algorithms-Part-4_en.vtt 3KB
  173. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/008 Protein Structure Preparation for Molecular Dynamics Simulations_en.vtt 3KB
  174. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390690-sort-mol2-bonds.pl 3KB
  175. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/004 Practical-36_ Very First Step; Preparation of Protein and Ligand_en.vtt 3KB
  176. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/004 Basic Theory of Molecular Dynamics Simulation (Part-3)_en.vtt 3KB
  177. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/011 Theory of Docking Steps-Part-2_en.vtt 3KB
  178. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/002 Introduction to Virtual Screening_en.vtt 3KB
  179. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb)_en.vtt 3KB
  180. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/009 Practical-50_ Setting Grid and Writing of Configuration File_en.vtt 3KB
  181. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/007 Scoring Algorithms_en.vtt 3KB
  182. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/022 Practical-21 Calculation of RMSF_en.vtt 3KB
  183. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/006 Practical-47_ Preparation of Protein Receptor for Virtual Screening_en.vtt 3KB
  184. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/003 Modules of GROMACS Used in Molecular Dynamics Tutorial_en.vtt 3KB
  185. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA)_en.vtt 3KB
  186. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/014 Practical-44_ Production Phase_en.vtt 3KB
  187. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 Practical-37_ Necessary Files Needed For Molecular Dynamics Simulations_en.vtt 3KB
  188. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/005 Fixing the Missing Residues in Protein 3D Structure Downloaded_en.vtt 3KB
  189. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/014 Practical-17 Equilibration Phase-II (Part-A)_en.vtt 3KB
  190. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/023 Practical-22 Calculation of Radius of Gyration (Rg)_en.vtt 3KB
  191. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37707482-md.mdp 3KB
  192. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/013 Practical-16 Equilibration Phase-I (Part-B)_en.vtt 3KB
  193. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390722-npt.mdp 3KB
  194. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390700-ie.mdp 3KB
  195. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390714-md.mdp 3KB
  196. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706768-npt.mdp 3KB
  197. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/012 Practical-43_ Thermostats_en.vtt 3KB
  198. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/002 Basic Theory of Molecular Dynamics Simulation (Part-1)_en.vtt 3KB
  199. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/009 Preparation of Topology File for Molecular Dynamics Simulations_en.vtt 3KB
  200. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/002 Features of Linux Operating System_en.vtt 2KB
  201. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390728-nvt.mdp 2KB
  202. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/002 Experimental Techniques to Determine 3D Structure of Protein_en.vtt 2KB
  203. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/016 Understanding md.mdp File Before Final Phase_en.vtt 2KB
  204. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/021 Very Important Step; Be Careful Here_en.vtt 2KB
  205. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/006 MD (Molecular Dynamics Simulation) Cycle_en.vtt 2KB
  206. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706750-nvt.mdp 2KB
  207. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/001 Basic Type of Operating System Available in Market_en.vtt 2KB
  208. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/015 Issue With Protein Structure Preparation in MGL Tools_en.vtt 2KB
  209. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/005 What's Next__en.vtt 2KB
  210. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/005 Basic Theory of Molecular Dynamics Simulation (Part-4)_en.vtt 2KB
  211. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/011 Practical-52_ Analysis_en.vtt 2KB
  212. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/008 Types of Docking_en.vtt 2KB
  213. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/007 Intro to Protein 3D Structure Prediction_en.vtt 2KB
  214. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/001 Biggest Drawback of Conventional Docking Protocol_en.vtt 2KB
  215. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/009 Basic Steps in Docking Protocol_en.vtt 2KB
  216. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/012 Equilibration and Production Phase of Molecular Dynamics Simulation_en.vtt 2KB
  217. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/001 Importance of Virtual Screening_en.vtt 2KB
  218. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/003 Basic Steps of Protein-Ligand MD Simulations_en.vtt 2KB
  219. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/001 Introduction of Docking-Part-1_en.vtt 2KB
  220. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/002 Introduction of Docking-Part-2_en.vtt 2KB
  221. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/011 Energy Minimization (EM) of System_en.vtt 2KB
  222. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/006 Commands to Run Molecular Dynamics Simulations (For You)_en.vtt 1KB
  223. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/010 Solvation and Ionization of System_en.vtt 1KB
  224. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/001 Basic Introduction of Molecular Dynamic Simulations and its Steps_en.vtt 1KB
  225. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/005 Sampling Algorithms-Part-3_en.vtt 1KB
  226. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727946-script1.py 1KB
  227. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/006 Commands to Run Ligand-Protein Molecular Dynamics Simulations_en.vtt 1KB
  228. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390692-em.mdp 1KB
  229. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/004 Sampling Algorithms-Part-2_en.vtt 1KB
  230. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations_en.vtt 1KB
  231. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706684-ions.mdp 1KB
  232. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706700-minim.mdp 1KB
  233. ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/019 Commands for Analysis of Molecular Dynamics Simulation Data_en.vtt 1KB
  234. ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390704-ions.mdp 1KB
  235. ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/003 Terminal of Linux Operating System_en.vtt 1KB
  236. ~Get Your Files Here !/01 - Important Massage Before Start of The Course/001 Important Massage from Instructors_en.vtt 908B
  237. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/004 Commands Needed to Run Virtual Screening_en.vtt 834B
  238. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/003 Sampling Algorithms-Part-1_en.vtt 804B
  239. ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/007 Basic Steps of Molecular Dynamics Simulations_en.vtt 780B
  240. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37081170-script3.py 553B
  241. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727980-script5.py 527B
  242. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727956-script2.py 469B
  243. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37081164-script2.py 464B
  244. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727974-script4.py 410B
  245. ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/37709016-Vina-linux.pl 409B
  246. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727968-script3.py 383B
  247. ~Get Your Files Here !/Bonus Resources.txt 357B
  248. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727940-qseq1.ali 263B
  249. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37081162-script1.py 240B
  250. Get Bonus Downloads Here.url 182B
  251. ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/37707734-conf.txt 182B
  252. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37081186-alignmnet.ali 35B